Publications

Joulot, M., Colliot, O., and Burgos, N. (2026). Comparing Longitudinal Preprocessing Pipelines for Brain Volume Consistency in T1-Weighted MRI Test-Retest Scans. In SPIE Medical Imaging 2026: Clinical and Biomedical Imaging, Vancouver (oral). | HAL

Joulot, M., Colliot, O., and Burgos, N. (2026). Comparing Volumetric Consistency of Longitudinal Preprocessing: A Multi-Cohort Test-Retest Study. Organisation Human Brain Mapping, Bordeaux.

Joulot, M., Colliot, O., and Burgos, N. (2025). Benchmark of Longitudinal Preprocessing of T1W Brain MRI. Catalysing a United Response in Europe to Neurodegenerative Diseases (Cure-ND), Paris.

Joulot, M., Gensollen, N., Vaillant, G., Burgos, N., and Colliot, O. (2024). Clinica, an Open-Source Software to Facilitate Neuroimaging Studies. Colloque Français d'Intelligence Artificielle en Imagerie Biomédicale, Grenoble.

Bouzigues, A., Campana, G., Joulot, M., Gensollen, N., Russell, L., Foster, P., Ferry-Bolder, E., van Swieten, J., Jiskoot, L., Seelaar, H., Sanchez-Valle, R., Laforce, R. Jr., Graff, C., Galimberti, D., Vandenberghe, R., de Mendonça, A., Tiraboschi, P., Santana, I., Gerhard, A., Levin, J., Sorbi, S., Otto, M., Bertoux, M., Lebouvier, T., Ducharme, S., Butler, C., Finger, E., Tartaglia, M.C., Masellis, M., Rowe, J., Synofzik, M., Moreno, F., Borroni, B., Le Ber, I., Zanusso, G., Rohrer, J., and Migliaccio, R. (2026). Composite Grey Matter Fingerprints for Genetic Frontotemporal Dementia. Journal of Neurology, Neurosurgery, and Psychiatry (in press).

Yang, Y.-F., Heinsfeld, A.S., Gondová, A., Vieira, B.H., Wang, Q., Li, X., Haugen, B., Bandettini, P., Bryant, A., Chakravary, M.M., Clarke, N., Clénet, B., Clucas, J.C., Dugré, M., Earl, E., Germani, E., Goodale, S.E., Gulban, O.F., Huber, R., Jeganathan, J., Joulot, M., Kai, J., Sitek, K.R., Koiso, K., Korbmacher, M., Maullin-Sapey, T., Maumet, C., McPherson, B.C., Meisler, S.L., Mentch, J., Miedema, M., Moia, S., Nikolaidis, A., Taylor, P.A., Picard, M.-E., Pizzuti, A., Provins, C., Savary, E., Steinkamp, S.R., Taschler, B., Dyken, P.C.V., White, T., Yu, J.-C., Zou, Y., and Haak, K.V. (2025). Proceedings of the OHBM Hackathon 2023. Aperture Neuro, 5. — DOI

Bouzigues, A., Du, V.L., Joulot, M., Peysson, N., Houot, M., Béranger, B., Russell, L.L., Foster, P.H., Ferry-Bolder, E., van Swieten, J.C., Jiskoot, L., Seelaar, H., Sanchez-Valle, R., Laforce, R., Graff, C., Galimberti, D., Vandenberghe, R., de Mendonça, A., Tiraboschi, P., Santana, I., Gerhard, A., Levin, J., Sorbi, S., Otto, M., Bertoux, M., Lebouvier, T., Ducharme, S., Butler, C.R., Le Ber, I., Finger, E., Tartaglia, M.C., Masellis, M., Rowe, J.B., Synofzik, M., Moreno, F., Borroni, B., Rohrer, J.D., and Migliaccio, R. (2025). Structural and Functional Connectivity in Tau Mutation Carriers: From Presymptomatic to Symptomatic Frontotemporal Dementia. Alzheimer's & Dementia, 21(7): e70367. — DOI

Hemforth, L., Couvy-Duchesne, B., Matos, K., Brianceau, C., Joulot, M., Banaschewski, T., Bokde, A., Desrivières, S., Florg, H., Grigis, A., Garavan, H., Gowland, P., Heinz, A., Brühl, R., Martinot, J.-L., Paillère-Martinot, M.-L., Artigesn, E., Papadopoulos, D., Lemaitrei, H., and Colliot, O. (2024). Automatic Rating of Incomplete Hippocampal Inversions Evaluated across Multiple Cohorts. Machine Learning for Biomedical Imaging, 2: 1004–1029. — DOI

Dugré, M., Wang, M., Bhagwat, N., Pfarr, J.-K., Macdonald, A., d'Angremont, E., Dai, A., Danyluik, M., Gau, R., Ismaili, A., Jahanpour, A., Jahanshad, N., Joubert, A., Joulot, M., Laansma, M.A., Mansour, S., McPherson, B., Mohammadalinejad, G., Prasad, S., Roper, D., Sanz-Robinson, J., Scarsbrook, J., Stewart, A., Tan, T., Torabi, M., Tu, J.C., Urchs, S., van Heese, E.M., Waller, L., Devenyi, G.A., Chakravarty, M., Bollmann, S., Thompson, P.M., van der Werf, Y.D., Dickie, E., Burgos, N., Halchenko, Y.O., and Poline, J.-B. (2026). Beyond Tool Development: Building the Nipoppy Pipeline Store, Ecosystem and Community. Organisation Human Brain Mapping, Bordeaux.

Joubert, A., Joulot, M., Gensollen, N., and Burgos, N. (2026). Benchmarking Skull-Stripping Methods for Integration in Clinica. Organisation Human Brain Mapping, Bordeaux.

Joubert, A., Joulot, M., Gensollen, N., and Burgos, N. (2026). Benchmarking Skull-Stripping Methods for Integration in Clinica. Colloque Français d'Intelligence Artificielle en Imagerie Biomédicale, Lyon.

Vaillant, G., Gensollen, N., Joulot, M., El Rifai, O., Diaz Melo, M., Colliot, O., and Burgos, N. (2023). From Nipype to Pydra: a Clinica Story. Organisation Human Brain Mapping, Montreal.

El Rifai, O., Diaz Melo, M., Hassanaly, R., Joulot, M., Routier, A., Thibeau-Sutre, E., Vaillant, G., Durrleman, S., Burgos, N., and Colliot, O. (2022). Advances in the Clinica Software Platform for Clinical Neuroimaging Studies. Organisation Human Brain Mapping, Glasgow.